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The seventh blind test of crystal structure prediction: structure generation methods

  • Lily M. Hunnisett
  • , Jonas Nyman
  • , Nicholas Francia
  • , Nathan S. Abraham
  • , Claire S. Adjiman
  • , Srinivasulu Aitipamula
  • , Tamador Alkhidir
  • , Mubarak Almehairbi
  • , Andrea Anelli
  • , Dylan M. Anstine
  • , John E. Anthony
  • , Joseph E. Arnold
  • , Faezeh Bahrami
  • , Michael A. Bellucci
  • , Rajni M. Bhardwaj
  • , Imanuel Bier
  • , Joanna A. Bis
  • , A. Daniel Boese
  • , David H. Bowskill
  • , James Bramley
  • Jan Gerit Brandenburg, Doris E. Braun, Patrick W.V. Butler, Joseph Cadden, Stephen Carino, Eric J. Chan, Chao Chang, Bingqing Cheng, Sarah M. Clarke, Simon J. Coles, Richard I. Cooper, Ricky Couch, Ramon Cuadrado, Tom Darden, Graeme M. Day, Hanno Dietrich, Yiming Ding, Antonio DiPasquale, Bhausaheb Dhokale, Bouke P. van Eijck, Mark R.J. Elsegood, Dzmitry Firaha, Wenbo Fu, Kaori Fukuzawa, Joseph Glover, Hitoshi Goto, Chandler Greenwell, Rui Guo, Jürgen Harter, Julian Helfferich, Detlef W.M. Hofmann, Johannes Hoja, John Hone, Richard Hong, Geoffrey Hutchison, Yasuhiro Ikabata, Olexandr Isayev, Ommair Ishaque, Varsha Jain, Yingdi Jin, Aling Jing, Erin R. Johnson, Ian Jones, K. V.Jovan Jose, Elena A. Kabova, Adam Keates, Paul F. Kelly, Dmitry Khakimov, Stefanos Konstantinopoulos, Liudmila N. Kuleshova, He Li, Xiaolu Lin, Alexander List, Congcong Liu, Yifei Michelle Liu, Zenghui Liu, Zhi Pan Liu, Joseph W. Lubach, Noa Marom, Alexander A. Maryewski, Hiroyuki Matsui, Alessandra Mattei, R. Alex Mayo, John W. Melkumov, Sharmarke Mohamed, Zahrasadat Momenzadeh Abardeh, Hari S. Muddana, Naofumi Nakayama, Kamal Singh Nayal, Marcus A. Neumann, Rahul Nikhar, Shigeaki Obata, Dana O’Connor, Artem R. Oganov, Koji Okuwaki, Alberto Otero-De-la-Roza, Constantinos C. Pantelides, Sean Parkin, Chris J. Pickard, Luca Pilia, Tatyana Pivina, Rafał Podeszwa, Alastair J.A. Price, Louise S. Price, Sarah L. Price, Michael R. Probert, Angeles Pulido, Gunjan Rajendra Ramteke, Atta Ur Rehman, Susan M. Reutzel-Edens, Jutta Rogal, Marta J. Ross, Adrian F. Rumson, Ghazala Sadiq, Zeinab M. Saeed, Alireza Salimi, Matteo Salvalaglio, Leticia Sanders de Almada, Kiran Sasikumar, Sivakumar Sekharan, Cheng Shang, Kenneth Shankland, Kotaro Shinohara, Baimei Shi, Xuekun Shi, A. Geoffrey Skillman, Hongxing Song, Nina Strasser, Jacco van de Streek, Isaac J. Sugden, Guangxu Sun, Krzysztof Szalewicz, Benjamin I. Tan, Lu Tan, Frank Tarczynski, Christopher R. Taylor, Alexandre Tkatchenko, Rithwik Tom, Mark E. Tuckerman, Yohei Utsumi, Leslie Vogt-Maranto, Jake Weatherston, Luke J. Wilkinson, Robert D. Willacy, Lukasz Wojtas, Grahame R. Woollam, Zhuocen Yang, Etsuo Yonemochi, Xin Yue, Qun Zeng, Yizu Zhang, Tian Zhou, Yunfei Zhou, Roman Zubatyuk, Jason C. Cole
  • Cambridge Crystallographic Data Centre
  • University College London
  • AbbVie
  • Imperial College London
  • Carnegie Mellon University
  • University of Kentucky
  • University of Southampton
  • Ferdowsi University of Mashhad
  • University of Graz
  • Merck KGaA
  • University of Innsbruck
  • New York University
  • Curtin University
  • Dalhousie University
  • University of Oxford
  • OpenEye Scientific Software, Inc
  • Department of Immunology
  • Utrecht University
  • Loughborough University
  • Osaka University
  • Toyohashi University of Technology
  • CRS4 - Centro di Ricerca Sviluppo e Studi Superiori in Sardegna
  • University of Pittsburgh
  • University of Delaware
  • University of Hyderabad
  • The University of Reading
  • FlexCryst
  • Fudan University
  • Skolkovo Institute of Science and Technology
  • Yamagata University
  • Universidad de Oviedo
  • University of Cambridge
  • WPI-AIMR, Tohoku University
  • University of Cagliari
  • University of Silesia
  • Newcastle University
  • Freie Universität Berlin
  • University of Luxembourg
  • Courant Institute of Mathematical Sciences
  • NYU-ECNU Center for Computational Chemistry at NYU Shanghai
  • University of South Florida, Tampa

Research output: Contribution to journalArticlepeer-review

73 Scopus citations

Abstract

A seventh blind test of crystal structure prediction was organized by the Cambridge Crystallographic Data Centre featuring seven target systems of varying complexity: a silicon and iodine-containing molecule, a copper coordination complex, a near-rigid molecule, a cocrystal, a polymorphic small agrochemical, a highly flexible polymorphic drug candidate, and a polymorphic morpholine salt. In this first of two parts focusing on structure generation methods, many crystal structure prediction (CSP) methods performed well for the small but flexible agrochemical compound, successfully reproducing the experimentally observed crystal structures, while few groups were successful for the systems of higher complexity. A powder X-ray diffraction (PXRD) assisted exercise demonstrated the use of CSP in successfully determining a crystal structure from a low-quality PXRD pattern. The use of CSP in the prediction of likely cocrystal stoichiometry was also explored, demonstrating multiple possible approaches. Crystallographic disorder emerged as an important theme throughout the test as both a challenge for analysis and a major achievement where two groups blindly predicted the existence of disorder for the first time. Additionally, large-scale comparisons of the sets of predicted crystal structures also showed that some methods yield sets that largely contain the same crystal structures.

Original languageBritish English
Pages (from-to)517-547
Number of pages31
JournalActa Crystallographica Section B: Structural Science, Crystal Engineering and Materials
Volume80
DOIs
StatePublished - 1 Dec 2024

Keywords

  • blind test
  • Cambridge Structural Database
  • crystal structure prediction
  • lattice energy
  • polymorphism

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