Exploiting the Transferability of Deep Learning Systems across Multi-modal Retinal Scans for Extracting Retinopathy Lesions

Taimur Hassan, Muhammad Usman Akram, Naoufel Werghi

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

17 Scopus citations

Abstract

Retinal lesions play a vital role in the accurate classification of retinal abnormalities. Many researchers have proposed deep lesion-aware screening systems that analyze and grade the progression of retinopathy. However, to the best of our knowledge, no literature exploits the tendency of these systems to generalize across multiple scanner specifications and multi-modal imagery. Towards this end, this paper presents a detailed evaluation of semantic segmentation, scene parsing and hybrid deep learning systems for extracting the retinal lesions such as intra-retinal fluid, sub-retinal fluid, hard exudates, drusen, and other chorioretinal anomalies from fused fundus and optical coherence tomography (OCT) imagery. Furthermore, we present a novel strategy exploiting the transferability of these models across multiple retinal scanner specifications. A total of 363 fundus and 173,915 OCT scans from seven publicly available datasets were used in this research (from which 297 fundus and 59,593 OCT scans were used for testing purposes). Overall, a hybrid retinal analysis and grading network (RAGNet), backboned through ResNet50, stood first for extracting the retinal lesions, achieving a mean dice coefficient score of 0.822. Moreover, the complete source code and its documentation are released at http://biomisa.org/index.php/downloads/.

Original languageBritish English
Title of host publicationProceedings - IEEE 20th International Conference on Bioinformatics and Bioengineering, BIBE 2020
PublisherInstitute of Electrical and Electronics Engineers Inc.
Pages577-581
Number of pages5
ISBN (Electronic)9781728195742
DOIs
StatePublished - Oct 2020
Event20th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2020 - Virtual, Cincinnati, United States
Duration: 26 Oct 202028 Oct 2020

Publication series

NameProceedings - IEEE 20th International Conference on Bioinformatics and Bioengineering, BIBE 2020

Conference

Conference20th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2020
Country/TerritoryUnited States
CityVirtual, Cincinnati
Period26/10/2028/10/20

Keywords

  • Convolutional Neural Networks
  • Fundus Photography
  • Ophthalmology
  • Optical Coherence Tomography
  • Retinal Lesions

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